Add my YAPC::NA lightning talk about SGN

2011/YAPCNA/sgn/Makefile

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+
+presentation:
+	rubber --pdf pres.tex
+	evince pres.pdf
+
+clean:
+	rm *.aux *.out *.snm *.toc *.log *.nav *.pdf

2011/YAPCNA/sgn/pres.tex

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+\documentclass[12pt]{beamer}
+\usepackage{beamerthemeHannover, graphicx, clrscode, amsmath, amssymb, multicol}
+\usepackage{verbatim}
+\setbeamercolor{sidebar}{use=structure,bg=gray!60!green}
+\title{ Slicing and Dicing Plant Genomes with Perl }
+\author[@dukeleto]{Jonathan "Duke" Leto \\ Sol Genomics Network \\ http://solgenomics.net }
+\date{}
+
+\begin{document}
+
+\frame{
+    \titlepage
+    \begin{center}
+    \includegraphics[scale=0.5]{sgn_logo}
+    \end{center}
+}
+
+\frame{
+    \frametitle{What is Sol Genomics Network? (SGN)}
+
+    SGN is an NSF-funded Model Organism Database on the web.  \\
+
+    \begin{itemize}
+    \item A model organism is a species that is extensively studied to understand
+    particular biological phenomena, with the expectation that discoveries made
+    in the organism model will provide insight into the workings of other
+    organisms.
+    \end{itemize}
+}
+
+\frame{
+    \frametitle{What is Sol Genomics Network? (Continued)}
+
+    SGN is part of the Lukas Mueller research lab at Boyce Thompson Institute
+    for Plant Research (BTI), located on the Cornell University campus. \\
+
+    \begin{center}
+    \includegraphics[scale=0.3]{tomato}
+    \end{center}
+
+    We study the Solanaceae (Nightshade family): Tomato, Potato, Petunia, Eggplant, and many more
+}
+
+\frame{
+    \frametitle{Who uses SGN?}
+    \begin{itemize}
+        \item Evolutionary plant biologists
+        \item Plant biochemists
+        \item Plant disease researchers
+        \item Plant breeders
+    \end{itemize}
+    \begin{center}
+    \includegraphics[scale=0.7]{plant-study}
+    \end{center}
+}
+
+\frame{
+    \frametitle{Code By Numbers}
+
+    Every line of code goes on Github, anything reusable goes to CPAN. \\
+
+    \begin{itemize}
+        \item 29 public Github repos
+        \item 10 committers
+        \item $\sim$ 10 CPAN modules released (more on the way)
+        \item Over 200K lines of Perl
+        \begin{itemize}
+            \item Lots of legacy code, slowly modernizing
+            \item Converted to Catalyst last year
+        \end{itemize}
+    \end{itemize}
+}
+
+\frame{
+    \frametitle{Some CPAN Modules}
+    \begin{itemize}
+        \item Bio::Chado::Schema - DBIx::Class schema for Chado
+        \item Bio::GFF3 - Manipulate GFF3 data files
+        \item Bio::Blast - Interact with BLAST databases
+        \item Catalyst::View::Bio::Seqio - Catalyst view for Bioperl sequences
+        \item Yapri - Yet Another Perl R Interface
+    \end{itemize}
+}
+
+\frame{
+    \frametitle{What we depend on most}
+    \begin{itemize}
+        \item Moose
+        \item Catalyst
+        \item DBIx::Class
+        \item Plack
+        \item Starman
+        \item BioPerl
+        \item Mason
+        \item WWW::Mechanize
+        \item autodie
+        \item Test::*
+    \end{itemize}
+}
+
+\frame{
+    \frametitle{My current project}
+    Mimosa: Miniature Model Organism Sequence Aligner \\
+
+    \begin{center}
+    \includegraphics[scale=0.3]{mimosa2}
+    \end{center}
+
+    Web interface to not-so-friendly command-line utilities for evolutionary biologists
+}
+
+\frame{
+    \frametitle{ Resources }
+    \begin{center}
+        \begin{itemize}
+           \item http://solgenomics.net
+           \item http://github.com/solgenomics
+           \item \#cxgn on irc.perl.org
+        \end{itemize}
+    \end{center}
+}
+
+\frame{
+    \frametitle{ Thanks! }
+    \begin{itemize}
+        \item Boyce Thompson Institute for Plant Research
+        \item National Science Foundation
+        \item All the Perl + CPAN hackers that make SGN possible
+    \end{itemize}
+
+    \begin{center}
+    \includegraphics[scale=1.0]{tomato_happy}
+    \end{center}
+}
+
+\end{document}