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139 lines
3.5 KiB
139 lines
3.5 KiB
\documentclass[12pt]{beamer}
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\usepackage{beamerthemeHannover, graphicx, clrscode, amsmath, amssymb, multicol}
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\usepackage{verbatim}
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\setbeamercolor{sidebar}{use=structure,bg=gray!60!green}
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\title{Mimosa \\ \small{ Miniature Model Organism Sequence Aligner } }
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\author[Leto]{Jonathan "Duke" Leto \\ Sol Genomics Network \\ http://solgenomics.net }
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\date{}
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\begin{document}
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\frame{
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\titlepage
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\begin{center}
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\end{center}
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}
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\frame{
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\frametitle{What is Mimosa?}
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\begin{center}
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\begin{itemize}
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\item Next Generation of the SGN BLAST Tool
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\item Why does everyone reinvent the web alignment wheel?
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\item Why are they all square-ish ?
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\end{itemize}
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\end{center}
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}
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\frame{
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\frametitle{Design Goals}
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\begin{center}
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\begin{itemize}
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\item Pluggable
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\item User-Friendly
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\item Interoperable
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\item Easy To Deploy
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\end{itemize}
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\end{center}
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}
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\frame{
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\frametitle{Pluggability}
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\begin{center}
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\begin{itemize}
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\item Supports any database that DBI knows about
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\begin{itemize}
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\item SQLite
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\item PostgreSQL
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\item MySQL
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\item ...
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\end{itemize}
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\item Can run standalone or through webserver
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\end{itemize}
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\end{center}
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}
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\frame{
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\frametitle{User-Friendly}
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\begin{center}
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\begin{itemize}
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\item Tooltipped context-sensitive help
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\item Support different workflows for different user types
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\item Download all results in various formats
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\item Ability to save user preferences
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\begin{itemize}
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\item Preferred Organism
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\item Default e-value/substitution matrix/etc
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\end{itemize}
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\end{itemize}
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\end{center}
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}
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\frame{
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\frametitle{Easy To Deploy}
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\begin{center}
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\begin{itemize}
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\item What, you don't want to install 5000 CPAN modules?
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\item Packages will be available for Debian/Ubuntu/etc
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\item Goal: Download 1 file, Run 1 command to install
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\end{itemize}
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\end{center}
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}
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\frame{
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\frametitle{Interoperable}
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\begin{center}
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\begin{itemize}
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\item Work with current GMOD software
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\item Web API to integrate with other web services
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\item Possibly an Intermine Plugin?
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\end{itemize}
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\end{center}
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}
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\frame{
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\frametitle{Screenshot}
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\includegraphics[width=10.5cm, height=9.5cm]{mimosa_new}
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}
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\frame{
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\frametitle{Killer Features}
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\begin{itemize}
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\item Web-based Sequence Set Administration
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\item Sequence Set Filtering by Organism
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\item Automated Sequence Set Updates (from NCBI/etc)
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\item What else?
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\end{itemize}
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}
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\frame{
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\frametitle{What is under the hood?}
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\begin{itemize}
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\item Moose
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\item BioPerl
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\item Bio::Chado::Schema
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\item Mason
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\item jQuery
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\end{itemize}
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}
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\frame{
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\frametitle{ Resources }
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\begin{center}
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\begin{itemize}
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\item http://github.com/GMOD/mimosa
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\item http://solgenomics.net
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\item \#gmod on irc.freenode.net
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\end{itemize}
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\end{center}
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}
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\frame{
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\frametitle{ Thanks }
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\begin{itemize}
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\item Boyce Thompson Institue for Plant Research
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\item NESCent
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\item NSF
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\end{itemize}
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}
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\end{document}
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